At this point, typing make should be enough to generate wrappers for your library.
By default, wrapper generation is quite verbose - it tells you exactly what it is doing - for example, it lists all the classes and methods which are being wrapped. If you find this annoying, you can turn it off by compiling with the verbose=no option, as in:
make verbose=no
If you are compiling your library with debugging enabled - ie, typing
make debug=yesthe wrapper library will also be generated with debugging enabled. This means that the GNUmakefiles for the wrapping library will always automatically use debug=yes when the wrapping library is compiled.
To stop JIGS from automatically generating minimal javadoc comments and the quick reference documentation from them, it's enough to compile using javadoc=no, as in:
make javadoc=no